Jupyter Notebooks for Software Developers

Data Science, Jupyter, Python

Jupyter Notebook is an interactive web application that interfaces with the iPython repl, allowing you to run structured but iterative Python scripts. It is the de facto choice for data scientists to rapidly prototype pipelines, visualise data, or perform ad hoc analysis.

Jupyter notebooks are a fantastic way to visual any data sets you might have, as well and conduct ad hoc analysis. It is especially useful for querying databases and displaying the data in a repeatable manner.

Setting Up Your Environment

When working on any python project, I like to use Pyenv and the Pyenv Virtual Environment wrapper to manage all of the different python versions and dependencies. You can find the installation guides for on the Pyenv GitHub repo and the Virtual Env wrapper.

If you don't have Python 3.6 installed already run the following:

$ pyenv install 3.6.0

Setup a new virtual environment and activate it:

# Create a Python 3.6.0 environment called jupyter-notebooks
$ pyenv virtualenv 3.6.0 jupyter-notebooks

# Start the virtual environment
$ pyenv activate jupyter-notebooks 

Next, install all of the dependencies you'll require:

$ pip install jupyter pandas numpy matplotlib seaborn

Finally, start your jupyter server in the directory you would like to save your notebooks:

$ jupyter notebook

The Empty Jupyter Interface

Creating a notebook

Notebooks are created using the dropdown in the top right hand corner of the page. Jupyter will automatically open and start the notebook so you'll be ready to go. Jupyter new notebook dropdown

Empty Jupyter notebook

Like with any other Python file, it is best practise to include your imports at the top of the file. In Jupyter, we can use the first cell for these. Shift + Enter runs the cell once you've written your script.

# Pandas for manipulating dataframes
import pandas as pd

# Matplotlib for inline graphs and plots
from matplotlib import pyplot as plt
%matplotlib inline

# Seaborn for plot styles.
import seaborn as sns

Reading in data


Pandas has a handy function for reading in csv files. Below are a couple of examples, but Chris Albon has a great blog post about importing csv files if you need more information.

# if the file has headers
df = pd.read_csv('path_to_file')

# if the file has no headers
df = pd.read_csv('path_to_file', headers=None)

Exploring data

There are a number of methods to explore a data-frame once it has been loaded. To inspect the first n rows, use the head function which returns the first 5 rows by default but can return any given number.

# Print the first 5

# Print the first 10

To find out some basic information about the data held within the data-frame, the describe function outputs a summary of the values excluding any NaN values.


Finally, to view a data-frame in its entirety pandas provides an option_context function to temporarily set options within a with context.

# Set the max rows to print to 999 and print.
with pd.option_context('display.max_rows', 999):
    print (df)

Modifying and filtering data

To access individual columns and values in a data-frame, pandas provides the loc parameter.

# fetch a column

# fetch a row

# fetch a single value
df.loc['index_value', 'column_name']

# filter a data-frame by a given condition
df.loc[lambda df: df['column_name'] > 3]

Columns can be added or modified easily using the apply function

# create a new column based on other column values
df['new_column'] = df['old_column'].apply(lambda val: val * 2)

# override a column
df['old_column'] = df['old_column'].apply(lambda val: val * 2)

Basic graphs

Graphing in Jupyter notebooks is as easy as calling a single seaboard function.

# create a line plot using your data frame
sns.lineplot(x="my_x_field", y="my_y_field", data=my_data_frame)

A line plot

# create a scatter plot
sns.scatterplot(x="my_x_field", y="my_y_field", size="attribute_z",
                sizes=(10, 200), # size boundaries

An example scatter plot

The Seaborn website provides a comprehensive list of examples, each with the code snippet used to generate them and some example data sets to explore.


Recently, GitHub has started rendering Jupyter notebooks in their UI, making it easier than ever to run and share notebooks. The iPython repository has a good example.

Useful links

Pandas Seaborn Jupyter

Tom - 2019-07-09